Projects

swappedDrops is a method to correct for artefacts from barcode swapping in 10X single-cell RNA sequencing data. Written with Aaron Lun in the DropletUtils package, which I now maintain.

A Shiny app designed to allow quick review of the mouse gastrulation atlas dataset without bioinformatic expertise. The codebase has been used as a framework for other visualisation tools from the Marioni Lab in subsequent years.

MouseGastrulationData is a Bioconductor package that dramatically simplifies access to the mouse gastrulation atlas, embryo chimaera, and other related datasets.